Fire Rescue Victoria (FRV) responded to a fire on Donnybrook Road, Norlane, around 1:41 a.m. after reports of a vehicle and shop ablaze.
Firefighters arrived within six minutes, confirming no occupants and containing the fire to the shop with CFA support.
The blaze was under control by 2:12 a.m., with police and SES also on scene.
Detectives from Taskforce Lunar believe the fire was caused by offenders ramming a vehicle into the tobacconist shop and setting it alight.
A crime scene has been established, and investigators are examining links to other recent incidents.
Witnesses or anyone with information is urged to contact Crime Stoppers at 1800 333 000 or online at www.crimestoppersvic.com.au.